Analyzing Large Network Dynamics with Process Hitting

Loïc Paulevé (1, 2) , Courtney Chancellor (3) , Maxime Folschette (3) , Morgan Magnin (3) , Olivier Roux (3)

1 AMIB - Algorithms and Models for Integrative Biology
2 BioInfo - LRI - Bioinformatique (LRI)
3 MeForBio

In this chapter, we introduce the Process Hitting framework, which provides the methodology of constructing the most permissive dynamics and then using successive refinements to fine tune the model. We present static analysis methods designed to identify fixed points or answer successive reachability questions, and introduce the stochastic semantics of Process Hitting too.

Domaines: Bio-informatique [q-bio.QM]; Bio-Informatique, Biologie Systémique [q-bio.QM]; Théorie et langage formel [cs.FL]

Loïc Paulevé, Courtney Chancellor, Maxime Folschette, Morgan Magnin, Olivier Roux. Analyzing Large Network Dynamics with Process Hitting. Luis Fariñas del Cerro; Katsumi Inoue. Logical Modeling of Biological Systems, Wiley, pp.125 - 166, 2014, 978-1-84821-680-8. ⟨hal-01060490⟩